docs: full reference + how-to set, migrate Makefile to Justfile

Documentation overhaul that adds the missing user-facing surface:
four reference pages (runtime-api, generated-api, cli, grpc-contract),
twelve how-tos walking from first-message through custom transports,
a troubleshooting page, and a docs/index map. Every how-to references
a runnable artifact under examples/, all of them verified end-to-end.

Build system migration: the Makefile is gone; the Justfile is now
the canonical entry point and absorbs every target. examples/Justfile
ships one recipe per runnable example, forwarded via top-level
'just examples <name>'. The 'examples are part of the documented
surface' convention is pinned in CLAUDE.md, alongside a dedicated
section on updating the conformance harness (PROTOBUF_TAG bumps,
libjsoncpp path drift, new test-category wiring).

Stale-number sweep across README/PLAN/CLAUDE: fixture count 18→10,
test count 613/130→639, wire.lua LOC dropped, M7 marked done.
Descriptor-shape block deduplicated against codegen.md as the
canonical source. gRPC transports spec status reframed from
'draft / decision deferred' to 'shipped contract; external
transports deferred'.

.gitignore picks up *.snap / *.xlog / *.vylog / *.run / *.pid /
512.lock so example state can't leak into the working tree.

docs: spec out msgpack encoding and gRPC transport story

Two design slices captured under docs/specs/ for later pickup:

- msgpack_encoding.md: proto schemas as IDL, msgpack as wire format.
  Default mp_map keyed by field number; ARRAY/MP_TUPLE opt-ins for
  box.space feeders; WKT bridging to MP_DATETIME / MP_INTERVAL.
- grpc_transports.md: Connect-JSON over HTTP/1.1 as default external
  transport, net.box tunnel for in-cluster, explicit no on HTTP/2
  termination (recommend Envoy). Conformance anchored on
  connectrpc/conformance — same framed-runner shape as the existing
  protobuf conformance harness.

PLAN.md cross-links both specs from M4, Open Questions, and Non-goals.