docs: full reference + how-to set, migrate Makefile to Justfile

Documentation overhaul that adds the missing user-facing surface:
four reference pages (runtime-api, generated-api, cli, grpc-contract),
twelve how-tos walking from first-message through custom transports,
a troubleshooting page, and a docs/index map. Every how-to references
a runnable artifact under examples/, all of them verified end-to-end.

Build system migration: the Makefile is gone; the Justfile is now
the canonical entry point and absorbs every target. examples/Justfile
ships one recipe per runnable example, forwarded via top-level
'just examples <name>'. The 'examples are part of the documented
surface' convention is pinned in CLAUDE.md, alongside a dedicated
section on updating the conformance harness (PROTOBUF_TAG bumps,
libjsoncpp path drift, new test-category wiring).

Stale-number sweep across README/PLAN/CLAUDE: fixture count 18→10,
test count 613/130→639, wire.lua LOC dropped, M7 marked done.
Descriptor-shape block deduplicated against codegen.md as the
canonical source. gRPC transports spec status reframed from
'draft / decision deferred' to 'shipped contract; external
transports deferred'.

.gitignore picks up *.snap / *.xlog / *.vylog / *.run / *.pid /
512.lock so example state can't leak into the working tree.